STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_08507COG3495 Uncharacterized protein conserved in bacteria. (289 aa)    
Predicted Functional Partners:
ATO7_08502
ABC transporter permease; COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
  
 0.814
ATO7_08492
Hypothetical protein.
       0.791
ATO7_08497
Lipoprotein-releasing system ATP-binding protein LolD; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
  
  
 0.784
ATO7_08482
COG3012 Uncharacterized protein conserved in bacteria; Belongs to the UPF0225 family.
       0.520
ATO7_08487
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.520
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.