STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_08967COG0589 Universal stress protein UspA and related nucleotide-binding proteins. (293 aa)    
Predicted Functional Partners:
ATO7_08962
Histidine kinase; COG2202 FOG: PAS/PAC domain.
     
 0.801
ATO7_08957
PAS/PAC sensor signal transduction histidine kinase; COG2202 FOG: PAS/PAC domain.
     
 0.675
ATO7_08952
FixJ family transcriptional regulator; COG4566 Response regulator.
     
 0.643
ATO7_08947
Crp/Fnr family transcriptional regulator; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.
 
  
 0.538
ATO7_08972
Ion channel family protein; COG1226 Kef-type K+ transport systems, predicted NAD-binding component.
       0.521
ATO7_05655
COG0642 Signal transduction histidine kinase.
  
 
 0.500
ATO7_09872
Sensory box histidine kinase/response regulator; COG0591 Na+/proline symporter.
     
 0.458
ATO7_15457
Hypothetical protein; COG3663 G:T/U mismatch-specific DNA glycosylase.
  
    0.439
ATO7_14883
GacS/BarA family sensor protein; COG0642 Signal transduction histidine kinase.
  
 
 0.421
ATO7_08942
Metallo-beta-lactamase superfamily protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
       0.412
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.