STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_09102Cobalt/zinc/cadmium efflux RND transporter outermembrane protein; COG1538 Outer membrane protein. (420 aa)    
Predicted Functional Partners:
ATO7_09097
CzcB family heavy metal RND efflux membrane fusion protein; COG0845 Membrane-fusion protein.
 
  0.942
ATO7_09092
Cobalt-zinc-cadmium resistance protein CzcA; COG3696 Putative silver efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.927
ATO7_03020
RND family efflux transporter MFP subunit; COG0845 Membrane-fusion protein.
  
  0.865
ATO7_03015
Cation efflux system protein; COG3696 Putative silver efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.836
ATO7_12678
RND family efflux transporter MFP subunit; COG0845 Membrane-fusion protein.
  
 0.776
ATO7_09042
COG0845 Membrane-fusion protein.
  
 0.633
ATO7_10617
COG0845 Membrane-fusion protein.
  
 0.633
ATO7_02865
RND family efflux transporter MFP subunit; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.612
ATO7_02870
CzcA family heavy metal efflux pump; COG3696 Putative silver efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.612
ATO7_09107
COG2264 Ribosomal protein L11 methylase.
       0.598
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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