STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_09897Peptidyl-dipeptidase A. (600 aa)    
Predicted Functional Partners:
ATO7_09902
Proton/peptide symporter family protein; COG3104 Dipeptide/tripeptide permease.
 
   
 0.865
ATO7_09892
Hypothetical protein; COG1090 Predicted nucleoside-diphosphate sugar epimerase.
       0.773
ATO7_12913
COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.
 
    
 0.642
ATO7_10002
COG4771 Outer membrane receptor for ferrienterochelin and colicins.
  
     0.638
ATO7_02775
Cartilage oligomeric matrix protein.
  
     0.627
ATO7_06350
COG4805 Uncharacterized protein conserved in bacteria.
  
     0.597
ATO7_09322
TonB-dependent receptor, plug; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.593
ATO7_10122
acetyl-CoA carboxylase biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
 
      0.533
ATO7_10817
COG3590 Predicted metalloendopeptidase.
  
   
 0.506
gatC
asparaginyl/glutamyl-tRNA amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
  
    0.499
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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