Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ATO7_11053 | rplC | ATO7_11053 | ATO7_03860 | COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.852 |
| ATO7_11053 | rplD | ATO7_11053 | ATO7_03855 | COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.855 |
| ATO7_11053 | rplM | ATO7_11053 | ATO7_09407 | COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.853 |
| ATO7_11053 | rplR | ATO7_11053 | ATO7_03780 | COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.851 |
| ATO7_11053 | rplU | ATO7_11053 | ATO7_03130 | COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.855 |
| ATO7_11053 | rpmD | ATO7_11053 | ATO7_03770 | COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | COG1841 Ribosomal protein L30/L7E. | 0.850 |
| ATO7_11053 | rpmF | ATO7_11053 | ATO7_01150 | COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.850 |
| ATO7_11053 | rpmH | ATO7_11053 | ATO7_06720 | COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | COG0230 Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.851 |
| ATO7_11053 | rpsC | ATO7_11053 | ATO7_03830 | COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.853 |
| ATO7_11053 | rpsO | ATO7_11053 | ATO7_14103 | COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.853 |
| rplC | ATO7_11053 | ATO7_03860 | ATO7_11053 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | 0.852 |
| rplC | rplD | ATO7_03860 | ATO7_03855 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.999 |
| rplC | rplM | ATO7_03860 | ATO7_09407 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
| rplC | rplR | ATO7_03860 | ATO7_03780 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
| rplC | rplU | ATO7_03860 | ATO7_03130 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.997 |
| rplC | rpmD | ATO7_03860 | ATO7_03770 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | COG1841 Ribosomal protein L30/L7E. | 0.999 |
| rplC | rpmF | ATO7_03860 | ATO7_01150 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.990 |
| rplC | rpmH | ATO7_03860 | ATO7_06720 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | COG0230 Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.979 |
| rplC | rpsC | ATO7_03860 | ATO7_03830 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
| rplC | rpsO | ATO7_03860 | ATO7_14103 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.997 |
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