STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_11318Short chain dehydrogenase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases). (304 aa)    
Predicted Functional Partners:
ATO7_10612
Modular polyketide synthase; COG2070 Dioxygenases related to 2-nitropropane dioxygenase.
  
 0.880
gltB
COG0067 Glutamate synthase domain 1.
     
 0.844
ATO7_07322
Carbamoyl-phosphate synthase L chain ATP-binding protein.
  
 
 0.837
ATO7_10607
COG3321 Polyketide synthase modules and related proteins; Belongs to the P-Pant transferase superfamily.
 
 0.702
ATO7_11323
COG1629 Outer membrane receptor proteins, mostly Fe transport.
       0.608
ATO7_11303
COG0500 SAM-dependent methyltransferases.
   
  0.600
ATO7_11313
COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
    
  0.570
ATO7_04310
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; COG0836 Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
    
 0.544
ATO7_11328
Putative TonB-dependent receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport.
       0.540
ATO7_11308
Hypothetical protein.
       0.531
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.