STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_13123Hypothetical protein. (538 aa)    
Predicted Functional Partners:
ATO7_13118
COG3170 Tfp pilus assembly protein FimV.
 
     0.938
ATO7_01120
Adenylate/guanylate cyclase; COG4252 Predicted transmembrane sensor domain.
 
     0.808
ATO7_12333
COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
 
     0.704
ATO7_13128
Na-Ca exchanger/integrin-beta4.
    
  0.702
ATO7_06675
ErfK/YbiS/YcfS/YnhG family protein; COG3034 Uncharacterized protein conserved in bacteria.
  
     0.670
ATO7_03690
Hypothetical protein; COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
 
     0.595
ATO7_02450
COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
 
     0.593
ATO7_03215
Serine/threonine protein kinase; COG4252 Predicted transmembrane sensor domain.
 
     0.576
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.535
ATO7_04075
COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
 
     0.489
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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