STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_13423Beta-lactamase domain-containing protein; COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold. (326 aa)    
Predicted Functional Partners:
ATO7_09347
Amidohydrolase; COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold.
  
     0.687
ATO7_11193
SH3 type 3 domain-containing protein.
  
     0.679
ATO7_09527
Hypothetical protein; COG0702 Predicted nucleoside-diphosphate-sugar epimerases.
 
    0.677
ATO7_07527
COG1309 Transcriptional regulator.
  
     0.645
ATO7_08137
Steroid dehydrogenase.
  
     0.596
ATO7_14568
Hypothetical protein; COG3687 Predicted metal-dependent hydrolase.
  
     0.588
ATO7_13408
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; COG0558 Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
   
 
 0.586
ATO7_00160
Hypothetical protein.
  
     0.559
uvrC
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.536
ATO7_13418
COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
       0.536
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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