STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_13458Lipoprotein. (921 aa)    
Predicted Functional Partners:
ATO7_13463
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
   
 0.922
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.915
bamD
Putative component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB); Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.881
ATO7_13428
PAS/PAC sensor protein; COG0457 FOG: TPR repeat.
 
    0.798
ATO7_13433
TonB2 protein; COG0810 Periplasmic protein TonB, links inner and outer membranes.
 
     0.755
ATO7_13453
Hypothetical protein.
 
     0.695
ATO7_13448
Transporter proton channel domain containing protein; COG0811 Biopolymer transport proteins.
 
     0.661
ATO7_00015
PAS/PAC sensor protein; COG0457 FOG: TPR repeat.
 
    0.647
ATO7_13443
TonB system transport protein ExbB2; COG0811 Biopolymer transport proteins.
 
     0.621
ATO7_15292
Polysaccharide export protein, polysialic acid transport protein kpsD; COG1596 Periplasmic protein involved in polysaccharide export.
  
     0.617
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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