STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_15942Bile acid:sodium symporter; COG0385 Predicted Na+-dependent transporter. (300 aa)    
Predicted Functional Partners:
ATO7_15947
SAM-dependent methyltransferase; COG0640 Predicted transcriptional regulators.
       0.774
ATO7_08662
NAD-dependent epimerase/dehydratase; COG0451 Nucleoside-diphosphate-sugar epimerases.
 
 
   0.754
ATO7_12268
RmlD substrate binding domain superfamily protein; COG0451 Nucleoside-diphosphate-sugar epimerases.
 
 
   0.744
ATO7_08657
Flavin-containing monooxygenase; COG2072 Predicted flavoprotein involved in K+ transport.
     0.676
ATO7_12263
Flavin-containing monooxygenase; COG2072 Predicted flavoprotein involved in K+ transport.
     0.653
ATO7_15952
Phosphoglycerate mutase family protein; COG0406 Fructose-2,6-bisphosphatase.
       0.556
ATO7_15932
N-acetyltransferase GCN5; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
       0.550
ATO7_15937
Lysyl endopeptidase.
       0.550
ATO7_15927
RDD domain-containing protein; COG1714 Predicted membrane protein/domain.
       0.546
ATO7_15957
COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family.
       0.445
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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