STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_15972COG2906 Bacterioferritin-associated ferredoxin. (67 aa)    
Predicted Functional Partners:
gltB
COG0067 Glutamate synthase domain 1.
    
 0.978
ATO7_09147
Major facilitator superfamily transporter; COG2223 Nitrate/nitrite transporter.
  
 
 0.948
ATO7_09157
COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases.
  
 
 0.942
ATO7_00945
COG0155 Sulfite reductase, beta subunit (hemoprotein).
    
 0.935
rnfB
Electron transporter subunit B; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
   
 0.931
ATO7_01335
COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases.
     
 0.925
ATO7_01360
COG0492 Thioredoxin reductase.
    
 0.916
ATO7_14953
Hypothetical protein; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
    
  0.908
ATO7_09167
Nitrate reductase; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
    
 0.907
ATO7_06680
COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.
    
 0.902
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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