STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_16100Phytanoyl-CoA dioxygenase; COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin. (298 aa)    
Predicted Functional Partners:
ATO7_16105
Hypothetical protein.
       0.773
ATO7_16095
COG4323 Predicted membrane protein.
       0.697
ATO7_10612
Modular polyketide synthase; COG2070 Dioxygenases related to 2-nitropropane dioxygenase.
  
 0.650
ATO7_09657
Dehydrogenase; COG0277 FAD/FMN-containing dehydrogenases.
   
 0.601
ATO7_10477
FAD-linked oxidoreductase; COG0277 FAD/FMN-containing dehydrogenases.
   
 0.601
ATO7_14683
COG0277 FAD/FMN-containing dehydrogenases.
   
 0.601
ATO7_16110
Transcriptional regulator, TetR family protein; COG1309 Transcriptional regulator.
       0.531
ATO7_14258
COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.
    
  0.516
ATO7_01600
Lipid-transfer protein; COG0183 Acetyl-CoA acetyltransferase.
   
 
  0.495
ATO7_01670
COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
  0.495
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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