STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_16215COG3308 Predicted membrane protein. (116 aa)    
Predicted Functional Partners:
ATO7_16220
COG0655 Multimeric flavodoxin WrbA; Belongs to the WrbA family.
       0.697
ATO7_16225
Oligopeptide ABC transporter ATP-binding protein; COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
       0.686
ATO7_16230
Oligopeptide ABC transporter ATP-binding protein; COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
       0.686
ATO7_16235
Hypothetical protein; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
       0.686
ATO7_16240
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
       0.686
ATO7_16245
COG0747 ABC-type dipeptide transport system, periplasmic component.
       0.686
ATO7_16250
COG1652 Uncharacterized protein containing LysM domain.
       0.495
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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