STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORE96450.1COG5126 Ca2+-binding protein (EF-Hand superfamily). (248 aa)    
Predicted Functional Partners:
metH
COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain.
   
 
  0.733
ORE96448.1
COG0642 Signal transduction histidine kinase.
 
     0.614
ORE94400.1
Hypothetical protein.
  
     0.521
ORE95581.1
Family 1 extracellular solute-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.
  
     0.515
ORE96449.1
Two component transcriptional regulator; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.506
ORE91583.1
Hypothetical protein.
  
     0.494
ORE96412.1
Hypothetical protein.
  
     0.460
ORE91958.1
COG3152 Predicted membrane protein.
  
     0.458
ORE93079.1
Hypothetical protein.
  
     0.438
ORE95556.1
AsmA family protein; COG2982 Uncharacterized protein involved in outer membrane biogenesis.
  
     0.427
Your Current Organism:
Stappia sp. 22IIS9Z10
NCBI taxonomy Id: 1317123
Other names: S. sp. 22II-S9-Z10, Stappia sp. 22II-S9-Z10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.