Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ORE91966.1 | ORE92358.1 | ATO13_18430 | ATO13_15589 | COG0408 Coproporphyrinogen III oxidase. | HemY domain-containing protein. | 0.816 |
ORE91966.1 | ORE93658.1 | ATO13_18430 | ATO13_13311 | COG0408 Coproporphyrinogen III oxidase. | Ferrochelatase; COG0276 Protoheme ferro-lyase (ferrochelatase). | 0.735 |
ORE92358.1 | ORE91966.1 | ATO13_15589 | ATO13_18430 | HemY domain-containing protein. | COG0408 Coproporphyrinogen III oxidase. | 0.816 |
ORE92358.1 | ORE92359.1 | ATO13_15589 | ATO13_15594 | HemY domain-containing protein. | Hypothetical protein. | 0.773 |
ORE92358.1 | ORE92360.1 | ATO13_15589 | ATO13_15599 | HemY domain-containing protein. | uroporphyrinogen-III synthase. | 0.805 |
ORE92358.1 | ORE93427.1 | ATO13_15589 | ATO13_12156 | HemY domain-containing protein. | Hypothetical protein; COG5480 Predicted integral membrane protein. | 0.642 |
ORE92358.1 | ORE93609.1 | ATO13_15589 | ATO13_13066 | HemY domain-containing protein. | Hypothetical protein. | 0.746 |
ORE92358.1 | ORE93658.1 | ATO13_15589 | ATO13_13311 | HemY domain-containing protein. | Ferrochelatase; COG0276 Protoheme ferro-lyase (ferrochelatase). | 0.778 |
ORE92358.1 | ORE94140.1 | ATO13_15589 | ATO13_08706 | HemY domain-containing protein. | 2'-deoxycytidine 5'-triphosphate deaminase; COG0717 Deoxycytidine deaminase. | 0.629 |
ORE92358.1 | ORE96503.1 | ATO13_15589 | ATO13_06555 | HemY domain-containing protein. | Transcriptional regulator protein, MarR family; COG1846 Transcriptional regulators. | 0.688 |
ORE92358.1 | ORE96572.1 | ATO13_15589 | ATO13_06900 | HemY domain-containing protein. | SmpA/OmlA. | 0.683 |
ORE92358.1 | holA | ATO13_15589 | ATO13_13336 | HemY domain-containing protein. | COG1466 DNA polymerase III, delta subunit. | 0.625 |
ORE92359.1 | ORE92358.1 | ATO13_15594 | ATO13_15589 | Hypothetical protein. | HemY domain-containing protein. | 0.773 |
ORE92359.1 | ORE92360.1 | ATO13_15594 | ATO13_15599 | Hypothetical protein. | uroporphyrinogen-III synthase. | 0.773 |
ORE92360.1 | ORE92358.1 | ATO13_15599 | ATO13_15589 | uroporphyrinogen-III synthase. | HemY domain-containing protein. | 0.805 |
ORE92360.1 | ORE92359.1 | ATO13_15599 | ATO13_15594 | uroporphyrinogen-III synthase. | Hypothetical protein. | 0.773 |
ORE92360.1 | ORE93658.1 | ATO13_15599 | ATO13_13311 | uroporphyrinogen-III synthase. | Ferrochelatase; COG0276 Protoheme ferro-lyase (ferrochelatase). | 0.438 |
ORE93427.1 | ORE92358.1 | ATO13_12156 | ATO13_15589 | Hypothetical protein; COG5480 Predicted integral membrane protein. | HemY domain-containing protein. | 0.642 |
ORE93427.1 | ORE96572.1 | ATO13_12156 | ATO13_06900 | Hypothetical protein; COG5480 Predicted integral membrane protein. | SmpA/OmlA. | 0.701 |
ORE93427.1 | holA | ATO13_12156 | ATO13_13336 | Hypothetical protein; COG5480 Predicted integral membrane protein. | COG1466 DNA polymerase III, delta subunit. | 0.453 |
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