STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORE92387.1Helicase; COG0513 Superfamily II DNA and RNA helicases. (1202 aa)    
Predicted Functional Partners:
ORE92386.1
Hypothetical protein.
 
     0.667
ORE92390.1
CarD-like transcriptional regulator family protein; COG1329 Transcriptional regulators, similar to M. xanthus CarD.
 
     0.643
ORE92405.1
GcrA cell cycle regulator.
  
     0.615
ORE92389.1
COG1146 Ferredoxin.
       0.573
ORE95249.1
COG1797 Cobyrinic acid a,c-diamide synthase.
   
    0.556
ORE94535.1
Regulatory protein; COG1846 Transcriptional regulators.
  
     0.556
ORE95229.1
COG3741 N-formylglutamate amidohydrolase.
  
     0.537
ORE92382.1
Cobalt chelatase large subunit; COG4547 Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase).
  
     0.535
ORE92388.1
RNA-binding protein S4; COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog).
       0.528
lysK
COG1384 Lysyl-tRNA synthetase (class I).
  
     0.504
Your Current Organism:
Stappia sp. 22IIS9Z10
NCBI taxonomy Id: 1317123
Other names: S. sp. 22II-S9-Z10, Stappia sp. 22II-S9-Z10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.