STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DW2_07777Hypothetical protein; COG0822 NifU homolog involved in Fe-S cluster formation. (142 aa)    
Predicted Functional Partners:
DW2_17517
Class V aminotransferase; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
  
 0.999
DW2_17557
COG0520 Selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 0.998
DW2_01930
COG1076 DnaJ-domain-containing proteins 1.
  
 
 0.992
DW2_02125
COG0633 Ferredoxin.
  
 0.988
DW2_10149
COG0633 Ferredoxin.
  
 0.988
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.985
DW2_17537
FeS assembly ATPase SufC; COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.
 
  
 0.968
DW2_10729
Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
  
  
 0.962
DW2_17512
FeS assembly cluster transcription factor IscR; COG1959 Predicted transcriptional regulator.
  
  
 0.958
DW2_17522
Cysteine desulfurase activator complex subunit SufB; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
  
 0.912
Your Current Organism:
Thioclava atlantica
NCBI taxonomy Id: 1317124
Other names: LMG 27145, LMG:27145, MCCC 1A02612, T. atlantica, Thioclava atlantica Lai et al. 2015, Thioclava sp. 13D2W-2, strain 13D2W-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.