STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DW2_14760Phosphocarrier protein NPr; COG1925 Phosphotransferase system, HPr-related proteins. (90 aa)    
Predicted Functional Partners:
DW2_14755
PTS system, IIA component; COG2893 Phosphotransferase system, mannose/fructose-specific component IIA.
 
 
 0.998
DW2_06568
Phosphoenolpyruvate-protein phosphotransferase PtsP; COG3605 Signal transduction protein containing GAF and PtsI domains; Belongs to the PEP-utilizing enzyme family.
  
 
 0.988
DW2_14745
HPr kinase.
 
 
 
 0.904
DW2_14750
glmZ(sRNA)-inactivating NTPase; Displays ATPase and GTPase activities.
  
  
 0.897
DW2_09051
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN; COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type).
 
 
 0.895
DW2_01620
6-phosphofructokinase; COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); Belongs to the carbohydrate kinase PfkB family.
  
 
 0.880
tuf
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
  
 0.854
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
  
    0.850
DW2_02714
COG1609 Transcriptional regulators.
   
 
 0.843
DW2_03169
Regulatory protein LacI; COG1609 Transcriptional regulators.
   
 
 0.843
Your Current Organism:
Thioclava atlantica
NCBI taxonomy Id: 1317124
Other names: LMG 27145, LMG:27145, MCCC 1A02612, T. atlantica, Thioclava atlantica Lai et al. 2015, Thioclava sp. 13D2W-2, strain 13D2W-2
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