STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT82584.1Peptide/nickel transport system substrate-binding protein. (574 aa)    
Predicted Functional Partners:
SIT82592.1
Peptide/nickel transport system permease protein.
 
 0.999
SIT82598.1
Peptide/nickel transport system permease protein.
 
 0.999
SIT89300.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.970
SIT82572.1
Hypothetical protein.
 
     0.773
SIT78911.1
Methyl-accepting chemotaxis protein.
    
 0.665
SIT93554.1
Protein of unknown function.
  
 
 0.613
SIT93748.1
Hypothetical protein.
  
     0.559
SIT82579.1
Hypothetical protein.
       0.553
secF
SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
    
 0.545
SIT88200.1
Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter.
  
     0.502
Your Current Organism:
Pontibacter indicus
NCBI taxonomy Id: 1317125
Other names: CCM8435, MCC2027, Pontibacter indicus Singh et al. 2014, Pontibacter sp. LP100, strain LP100
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