STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT94506.1SH3 domain-containing protein. (418 aa)    
Predicted Functional Partners:
SIT94504.1
Uncharacterized membrane protein.
 
     0.736
SIT94501.1
L-alanine-DL-glutamate epimerase.
 
  
 0.679
SIT94499.1
D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4).
 
     0.589
SIT94508.1
ROK family protein (putative glucokinase).
 
     0.525
SIT85589.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.496
SIT85595.1
Starch-binding associating with outer membrane.
  
     0.490
SIT94502.1
7-keto-8-aminopelargonate synthetase.
       0.479
SIT75601.1
Zinc carboxypeptidase.
  
     0.463
SIT94509.1
Glucosamine-6-phosphate deaminase.
 
     0.463
SIT82620.1
Uncharacterized lipoprotein YddW, UPF0748 family.
  
     0.453
Your Current Organism:
Pontibacter indicus
NCBI taxonomy Id: 1317125
Other names: CCM8435, MCC2027, Pontibacter indicus Singh et al. 2014, Pontibacter sp. LP100, strain LP100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.