STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MGM1_5810TatD family deoxyribonuclease. (267 aa)    
Predicted Functional Partners:
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
  
 0.829
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
   0.820
MGM1_5800
Hypothetical protein.
       0.773
secD
Protein-export membrane protein SecD.
  
  
 0.584
MGM1_5820
Hypothetical protein.
       0.565
MGM1_5770
DHH family phosphoesterase.
       0.500
guaA
GMP synthase GuaA; Catalyzes the synthesis of GMP from XMP.
     
 0.491
thiI
Thiamine biosynthesis/tRNA modification protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
       0.488
MGM1_5750
YqaJ viral recombinase family protein.
       0.472
MGM1_5780
DisA domain-containing protein.
       0.459
Your Current Organism:
Mycoplasma girerdii
NCBI taxonomy Id: 1318617
Other names: C. Mycoplasma girerdii, Candidatus Mycoplasma girerdii, Mycoplasma sp. VCU_M1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.