STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERT69603.1Hypothetical protein; KEGG: mlh:MLEA_004620 5.6e-05 PTS system N-acetylmuramic acid-specific eiibc component; K11191 PTS system, N-acetylmuramic acid-specific IIB component K11192; Psort location: CytoplasmicMembrane, score: 10.00. (444 aa)    
Predicted Functional Partners:
ERT69604.1
HTH domain protein; KEGG: cbj:H04402_01237 1.0e-94 pseudouridine kinase; Psort location: Cytoplasmic, score: 9.97.
       0.521
psuG
Indigoidine synthase A-like protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.
       0.521
ERT69255.1
Hypothetical protein; KEGG: nsa:Nitsa_0867 4.2e-07 calcium-translocating p-type atpase, pmca-type; K01537 Ca2+-transporting ATPase; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.471
Your Current Organism:
Cetobacterium somerae
NCBI taxonomy Id: 1319815
Other names: C. somerae ATCC BAA-474, Cetobacterium somerae ATCC BAA-474, Cetobacterium somerae CCUG 46254, Cetobacterium somerae WAL 14325
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.