STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERI06171.1KEGG: lcr:LCRIS_01599 7.0e-105 hypothetical protein; K05989 alpha-L-rhamnosidase; Psort location: Cytoplasmic, score: 7.50. (727 aa)    
Predicted Functional Partners:
ERI06569.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; KEGG: bde:BDP_1353 6.6e-93 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00540; Psort location: Cytoplasmic, score: 9.67.
   
 0.915
ERI05299.1
KEGG: bmq:BMQ_1812 2.2e-37 short chain dehydrogenase/reductase family oxidoreductase; Psort location: Cytoplasmic, score: 9.97.
   
 0.915
ERI04019.1
Radical SAM domain protein; KEGG: vfi:VF_A0208 8.3e-15 arylsulfatase regulator (Fe-S oxidoreductase) K06871; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.842
ERI06559.1
Flavodoxin; KEGG: bbe:BBR47_03690 0.0065 azoR; azoreductase; K01118 FMN-dependent NADH-azoreductase.
  
   0.831
ERI04650.1
Hypothetical protein.
 
  
 0.695
ERI03806.1
Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
 
 0.687
ERI06368.1
Helicase protein; KEGG: hwc:Hqrw_2960 3.4e-15 rad25c; DNA repair helicase Rad25; Psort location: Cytoplasmic, score: 7.50.
    
   0.680
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.644
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.639
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.630
Your Current Organism:
Atopobium sp. F0209
NCBI taxonomy Id: 1321773
Other names: A. sp. oral taxon 810 str. F0209, Atopobium sp. oral taxon 810 str. F0209
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.