STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERK65926.1Hypothetical protein; KEGG: cco:CCC13826_1380 6.8e-20 thioredoxin reductase (TrxR); Psort location: CytoplasmicMembrane, score: 10.00. (223 aa)    
Predicted Functional Partners:
ERK65927.1
Helicase protein; KEGG: ftf:FTF0244 2.9e-106 DNA/RNA helicase; K01529; Psort location: Cytoplasmic, score: 8.96.
       0.775
ERK65928.1
Exonuclease; KEGG: mae:Maeo_0545 5.9e-21 exonuclease RNase T and DNA polymerase III; K02342 DNA polymerase III subunit epsilon; Psort location: Cytoplasmic, score: 8.96.
 
     0.692
ERK65925.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.592
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
       0.553
Your Current Organism:
Leptotrichia sp. W9775
NCBI taxonomy Id: 1321779
Other names: L. sp. oral taxon 215 str. W9775, Leptotrichia sp. oral taxon 215 str. W9775
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