STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ84169.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (90 aa)    
Predicted Functional Partners:
nusA
Transcription termination factor NusA; Participates in both transcription termination and antitermination.
  
    0.959
rimP
Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
  
  
 0.958
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
  
  
 0.949
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
  
    0.865
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
 
    0.829
ERJ84174.1
Riboflavin biosynthesis protein RibF; KEGG: tpd:Teth39_1205 4.7e-67 bifunctional riboflavin kinase/FMN adenylyltransferase; K11753 riboflavin kinase / FMN adenylyltransferase; Psort location: Cytoplasmic, score: 9.97; Belongs to the ribF family.
 
    0.778
ERJ84172.1
DHHA1 domain protein; KEGG: ppo:PPM_1934 1.9e-38 mipP; putative manganese-dependent inorganic pyrophosphatase K06881; Psort location: Cytoplasmic, score: 8.96.
  
    0.771
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
    0.715
ERJ80371.1
Hypothetical protein; KEGG: tmz:Tmz1t_1582 0.0089 alcohol dehydrogenase zinc-binding domain-containing protein; K00344 NADPH2:quinone reductase.
  
     0.715
ERJ84156.1
Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
    0.636
Your Current Organism:
Peptostreptococcaceae bacterium W5053
NCBI taxonomy Id: 1321784
Other names: P. bacterium oral taxon 113 str. W5053, Peptostreptococcaceae bacterium oral taxon 113 str. W5053
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.