STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubiXPolyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (184 aa)    
Predicted Functional Partners:
ERJ90411.1
Menaquinone biosynthesis decarboxylase, SCO4490 family; KEGG: sri:SELR_11510 6.9e-240 ubiD; putative 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182; Psort location: Cytoplasmic, score: 9.97; Belongs to the UbiD family.
 
 
 0.995
ERJ90410.1
KEGG: sri:SELR_11520 5.3e-107 putative 4-hydroxybenzoate polyprenyltransferase related family protein; K03179 4-hydroxybenzoate octaprenyltransferase; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the UbiA prenyltransferase family.
 
  
 0.977
serS
serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
       0.818
rnhA
Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.786
ERJ95806.1
Hypothetical protein.
       0.775
ERJ95809.1
Putative A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs.
       0.583
ERJ95803.1
Putative toluene tolerance protein Ttg2A; KEGG: ssg:Selsp_1809 5.6e-80 Fe(3+)-transporting ATPase K02065; Psort location: CytoplasmicMembrane, score: 9.99.
  
    0.553
ERJ95802.1
Virulence factor Mce family protein; KEGG: bba:Bd3413 4.9e-07 ABC transporter substrate binding protein K02067.
       0.546
ERJ95804.1
Hypothetical protein; KEGG: apb:SAR116_0647 1.8e-49 organic solvents resistance ABC transporter K02066; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the MlaE permease family.
       0.546
mqnA
Putative ACR; Catalyzes the dehydration of chorismate into 3-[(1- carboxyvinyl)oxy]benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2).
 
   
 0.528
Your Current Organism:
Selenomonas sp. F0426
NCBI taxonomy Id: 1321786
Other names: S. sp. oral taxon 892 str. F0426, Selenomonas sp. oral taxon 892 str. F0426
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