STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ92999.1Flavoprotein family protein; KEGG: bao:BAMF_2804 3.0e-81 ytfP; NAD(FAD) dehydrogenase K07007. (417 aa)    
Predicted Functional Partners:
cmk
Cytidylate kinase; KEGG: sri:SELR_19400 8.7e-75 cmk; putative cytidylate kinase K00945; Psort location: Cytoplasmic, score: 9.97.
  
    0.823
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
  
    0.821
ERJ93000.1
Putative pseudouridine synthase B, ribosomal large subunit; KEGG: sri:SELR_19430 1.6e-68 putative pseudouridine synthase K06178; Psort location: Cytoplasmic, score: 9.97; Belongs to the pseudouridine synthase RsuA family.
       0.818
ERJ92996.1
Acyltransferase; KEGG: sri:SELR_19390 4.2e-66 plsC; putative 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655; Psort location: Cytoplasmic, score: 8.96.
       0.805
ERJ93001.1
KEGG: ssg:Selsp_1252 0. DNA polymerase III, alpha subunit K02337; Psort location: Cytoplasmic, score: 9.97.
       0.786
ERJ93002.1
Hypothetical protein; KEGG: epr:EPYR_00997 1.3e-37 UDP-N-acetylglucosamine-peptide N-acetylglucosaminyltransferase SPINDLY; Psort location: Cytoplasmic, score: 8.96.
     
 0.663
ERJ93003.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.583
ERJ93004.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.583
rlmH
Putative rRNA large subunit m3Psi methyltransferase RlmH; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
  
    0.454
ERJ92995.1
Metallo-beta-lactamase domain protein; KEGG: sgg:SGGBAA2069_c15780 5.4e-43 vicX; Metallo-beta-lactamase superfamily; Psort location: Cytoplasmic, score: 9.97.
       0.426
Your Current Organism:
Selenomonas sp. F0426
NCBI taxonomy Id: 1321786
Other names: S. sp. oral taxon 892 str. F0426, Selenomonas sp. oral taxon 892 str. F0426
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