STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN4_11837Homologs of previously reported genes of unknown function. (105 aa)    
Predicted Functional Partners:
BN4_11836
Putative permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.738
BN4_11838
Protein of unknown function; No homology to any previously reported sequences.
       0.551
copA
Copper-exporting P-type ATPase A.
  
  
 0.421
BN4_20121
Heavy metal translocating P-type ATPase.
  
  
 0.421
BN4_11835
Protein of unknown function; No homology to any previously reported sequences.
       0.414
Your Current Organism:
Pseudodesulfovibrio piezophilus
NCBI taxonomy Id: 1322246
Other names: Desulfovibrio piezophilus C1TLV30, Desulfovibrio piezophilus DSM 21447, Desulfovibrio piezophilus JCM 15486, Desulfovibrio sp. C1TLV30, P. piezophilus C1TLV30, Pseudodesulfovibrio piezophilus C1TLV30, Pseudodesulfovibrio piezophilus DSM 21447, Pseudodesulfovibrio piezophilus JCM 15486
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.