STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001730685_01982Unannotated protein. (176 aa)    
Predicted Functional Partners:
GCA_001730685_01983
Unannotated protein.
  
  
 0.954
GCA_001730685_02077
Unannotated protein.
    
 0.846
GCA_001730685_01707
Unannotated protein.
    
  0.747
GCA_001730685_02207
Unannotated protein.
    
  0.741
GCA_001730685_02383
Unannotated protein.
   
 
  0.740
GCA_001730685_00796
Unannotated protein.
    
  0.713
GCA_001730685_02017
Unannotated protein.
    
  0.713
GCA_001730685_02251
Unannotated protein.
   
 
  0.637
GCA_001730685_00449
Unannotated protein.
   
    0.539
GCA_001730685_00532
Unannotated protein.
  
 
 0.500
Your Current Organism:
Caloranaerobacter ferrireducens
NCBI taxonomy Id: 1323370
Other names: C. ferrireducens, Caloranaerobacter ferrireducens Zeng et al. 2015, Caloranaerobacter sp. DY22619, DSM 27799, JCM 19467, MCCC1A06455, strain DY22619
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.