STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000410875_01327Unannotated protein. (270 aa)    
Predicted Functional Partners:
CO192_03425
Unannotated protein.
  
   0.702
CO192_12185
Unannotated protein.
    
  0.700
GCA_000410875_01660
Unannotated protein.
  
   0.700
CO192_04720
Unannotated protein.
  
   0.697
CO192_17320
Unannotated protein.
       0.543
GCA_000410875_00905
Unannotated protein.
  
     0.522
rpoA
Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.521
CO192_18505
Unannotated protein.
  
     0.504
CO192_18540
Unannotated protein.
  
     0.474
CO192_15020
Unannotated protein.
  
     0.437
Your Current Organism:
Pseudomonas pelagia
NCBI taxonomy Id: 1323663
Other names: P. pelagia CL-AP6, Pseudomonas pelagia CL-AP6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.