STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPA76238.1Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)    
Predicted Functional Partners:
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
    
  0.864
ribBA
Bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.695
OPA76152.1
Molybdopterin converting factor subunit 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.570
OPA76237.1
Low specificity L-threonine aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.570
OPA76153.1
Molybdopterin synthase subunit 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.569
OPA80330.1
uroporphyrinogen-III C-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.567
OPA79997.1
Aldose 1-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.565
OPA76160.1
GAF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.507
OPA76239.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.504
OPA75089.1
Geranyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.500
Your Current Organism:
Paenibacillus selenitireducens
NCBI taxonomy Id: 1324314
Other names: CCTCC AB2013097, KCTC 33157, P. selenitireducens, Paenibacillus selenitireducens Yao et al. 2014, Paenibacillus sp. ES3-24, strain ES3-24
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