T1ID94_RHOPR protein (Rhodnius prolixus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1ID94_RHOPR

Uncharacterized protein. (110 aa)

Predicted Functional Partners:

R4G7Y7_RHOPR

0.991

R4G3X0_RHOPR

0.986

T1IGM7_RHOPR

0.986

T1I6Q7_RHOPR

0.980

T1IAQ2_RHOPR

0.946

T1I3B8_RHOPR

0.919

T1I5G7_RHOPR

0.827

T1IDX2_RHOPR

0.827

R4G8I5_RHOPR

0.713

R4G3G1_RHOPR

0.687

Your Current Organism:

Rhodnius prolixus

NCBI taxonomy Id: 13249
Other names: R. prolixus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R4G3G1_RHOPR	R4G7Y7_RHOPR	R4G3G1	R4G7Y7	Putative small nuclear ribonucleoprotein smd1.	Putative gem nuclear organelle associated protein 8.	0.726
R4G3G1_RHOPR	R4G8I5_RHOPR	R4G3G1	R4G8I5	Putative small nuclear ribonucleoprotein smd1.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.571
R4G3G1_RHOPR	T1I3B8_RHOPR	R4G3G1	T1I3B8	Putative small nuclear ribonucleoprotein smd1.	Tudor domain-containing protein.	0.973
R4G3G1_RHOPR	T1I5G7_RHOPR	R4G3G1	T1I5G7	Putative small nuclear ribonucleoprotein smd1.	Uncharacterized protein.	0.688
R4G3G1_RHOPR	T1I6Q7_RHOPR	R4G3G1	T1I6Q7	Putative small nuclear ribonucleoprotein smd1.	Uncharacterized protein.	0.762
R4G3G1_RHOPR	T1IAQ2_RHOPR	R4G3G1	T1IAQ2	Putative small nuclear ribonucleoprotein smd1.	WD_REPEATS_REGION domain-containing protein.	0.409
R4G3G1_RHOPR	T1ID94_RHOPR	R4G3G1	T1ID94	Putative small nuclear ribonucleoprotein smd1.	Uncharacterized protein.	0.687
R4G3G1_RHOPR	T1IDX2_RHOPR	R4G3G1	T1IDX2	Putative small nuclear ribonucleoprotein smd1.	Uncharacterized protein.	0.688
R4G3G1_RHOPR	T1IGM7_RHOPR	R4G3G1	T1IGM7	Putative small nuclear ribonucleoprotein smd1.	Uncharacterized protein.	0.809
R4G3X0_RHOPR	R4G7Y7_RHOPR	R4G3X0	R4G7Y7	Putative gem nuclear organelle associated protein 6.	Putative gem nuclear organelle associated protein 8.	0.982
R4G3X0_RHOPR	T1I3B8_RHOPR	R4G3X0	T1I3B8	Putative gem nuclear organelle associated protein 6.	Tudor domain-containing protein.	0.913
R4G3X0_RHOPR	T1I5G7_RHOPR	R4G3X0	T1I5G7	Putative gem nuclear organelle associated protein 6.	Uncharacterized protein.	0.794
R4G3X0_RHOPR	T1I6Q7_RHOPR	R4G3X0	T1I6Q7	Putative gem nuclear organelle associated protein 6.	Uncharacterized protein.	0.976
R4G3X0_RHOPR	T1IAQ2_RHOPR	R4G3X0	T1IAQ2	Putative gem nuclear organelle associated protein 6.	WD_REPEATS_REGION domain-containing protein.	0.943
R4G3X0_RHOPR	T1ID94_RHOPR	R4G3X0	T1ID94	Putative gem nuclear organelle associated protein 6.	Uncharacterized protein.	0.986
R4G3X0_RHOPR	T1IDX2_RHOPR	R4G3X0	T1IDX2	Putative gem nuclear organelle associated protein 6.	Uncharacterized protein.	0.794
R4G3X0_RHOPR	T1IGM7_RHOPR	R4G3X0	T1IGM7	Putative gem nuclear organelle associated protein 6.	Uncharacterized protein.	0.987
R4G7Y7_RHOPR	R4G3G1_RHOPR	R4G7Y7	R4G3G1	Putative gem nuclear organelle associated protein 8.	Putative small nuclear ribonucleoprotein smd1.	0.726
R4G7Y7_RHOPR	R4G3X0_RHOPR	R4G7Y7	R4G3X0	Putative gem nuclear organelle associated protein 8.	Putative gem nuclear organelle associated protein 6.	0.982
R4G7Y7_RHOPR	R4G8I5_RHOPR	R4G7Y7	R4G8I5	Putative gem nuclear organelle associated protein 8.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.713