STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSJP_0385Thioredoxin reductase. (320 aa)    
Predicted Functional Partners:
trxA
Thioredoxin 1; Function of homologous gene experimentally demonstrated in an other organism; carrier; Belongs to the thioredoxin family.
  
 
 0.833
trxA-2
Thioredoxin.
  
 
 0.833
NSJP_0581
Putative Thioredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.691
NSJP_0384
Protein of unknown function; No homology to any previously reported sequences.
       0.555
fdx
2Fe-2S ferredoxin.
   
 
 0.502
fdxB
2Fe-2S ferredoxin.
   
 
 0.502
moeB
Molybdopterin synthase sulfurylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
  
 0.502
moeB-2
Molybdopterin synthase sulfurylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
  
 0.502
NSJP_2810
Protein of unknown function; No homology to any previously reported sequences.
  
 
 0.489
NSJP_3168
Putative Peroxiredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.489
Your Current Organism:
Nitrospira japonica
NCBI taxonomy Id: 1325564
Other names: N. japonica, Nitrospira sp. NJ1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.