STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSJP_0728Putative Type IV pilus assembly protein PilW; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (374 aa)    
Predicted Functional Partners:
NSJP_0729
Putative Type IV pilus assembly protein PilV; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.975
NSJP_0726
Exported protein of unknown function; No homology to any previously reported sequences.
 
  
 0.967
NSJP_0730
Putative Type IV pilin PilA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.817
NSJP_0727
Putative Type IV pilus assembly protein PilX; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.775
NSJP_2375
Putative Type IV pilus biogenesis protein PilO; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.696
NSJP_1525
Homologs of previously reported genes of unknown function.
 
  
 0.668
NSJP_2374
Putative Type IV pilus biogenesis protein PilN; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.663
NSJP_0725
Homologs of previously reported genes of unknown function.
 
     0.635
NSJP_3893
Homologs of previously reported genes of unknown function.
 
     0.619
pilA
Type IV pilin PilA.
 
  
 0.606
Your Current Organism:
Nitrospira japonica
NCBI taxonomy Id: 1325564
Other names: N. japonica, Nitrospira sp. NJ1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.