Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NSJP_0419 | nifA-2 | NSJP_0419 | NSJP_0813 | Putative Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | Nif-specific regulatory protein. | 0.449 |
NSJP_0419 | rpoN | NSJP_0419 | NSJP_2370 | Putative Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | RNA polymerase, sigma-54 (Sigma N) factor. | 0.502 |
NSJP_0814 | NSJP_0815 | NSJP_0814 | NSJP_0815 | Protein of unknown function; No homology to any previously reported sequences. | Homologs of previously reported genes of unknown function. | 0.556 |
NSJP_0814 | nifA-2 | NSJP_0814 | NSJP_0813 | Protein of unknown function; No homology to any previously reported sequences. | Nif-specific regulatory protein. | 0.773 |
NSJP_0815 | NSJP_0814 | NSJP_0815 | NSJP_0814 | Homologs of previously reported genes of unknown function. | Protein of unknown function; No homology to any previously reported sequences. | 0.556 |
NSJP_0815 | nifA-2 | NSJP_0815 | NSJP_0813 | Homologs of previously reported genes of unknown function. | Nif-specific regulatory protein. | 0.556 |
nifA-2 | NSJP_0419 | NSJP_0813 | NSJP_0419 | Nif-specific regulatory protein. | Putative Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 0.449 |
nifA-2 | NSJP_0814 | NSJP_0813 | NSJP_0814 | Nif-specific regulatory protein. | Protein of unknown function; No homology to any previously reported sequences. | 0.773 |
nifA-2 | NSJP_0815 | NSJP_0813 | NSJP_0815 | Nif-specific regulatory protein. | Homologs of previously reported genes of unknown function. | 0.556 |
nifA-2 | rpoN | NSJP_0813 | NSJP_2370 | Nif-specific regulatory protein. | RNA polymerase, sigma-54 (Sigma N) factor. | 0.772 |
rpoN | NSJP_0419 | NSJP_2370 | NSJP_0419 | RNA polymerase, sigma-54 (Sigma N) factor. | Putative Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 0.502 |
rpoN | nifA-2 | NSJP_2370 | NSJP_0813 | RNA polymerase, sigma-54 (Sigma N) factor. | Nif-specific regulatory protein. | 0.772 |