STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSJP_1978Homologs of previously reported genes of unknown function. (254 aa)    
Predicted Functional Partners:
NSJP_1979
Homologs of previously reported genes of unknown function.
       0.820
NSJP_1980
Peptidase S1C, HtrA family.
       0.820
NSJP_1977
Protein of unknown function; No homology to any previously reported sequences.
       0.555
NSJP_1981
Uncharacterized ATPase, AAA family; Belongs to the AAA ATPase family.
       0.553
dop-2
Depupylase.
       0.476
NSJP_1975
Homologs of previously reported genes of unknown function.
  
    0.470
NSJP_1976
Homologs of previously reported genes of unknown function.
       0.466
Your Current Organism:
Nitrospira japonica
NCBI taxonomy Id: 1325564
Other names: N. japonica, Nitrospira sp. NJ1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.