STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSJP_2490Putative Serine protease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (336 aa)    
Predicted Functional Partners:
NSJP_0229
Serine protease Do; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.768
ypfJ
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
     
 0.589
NSJP_2491
Membrane protein of unknown function; No homology to any previously reported sequences.
       0.586
NSJP_1188
GAF sensor hybrid histidine kinase.
  
  
 0.508
NSJP_1189
Putative Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.503
NSJP_1931
Protein of unknown function; No homology to any previously reported sequences.
  
  
 0.497
NSJP_1814
Protein of unknown function; No homology to any previously reported sequences.
  
  
 0.474
NSJP_3767
Putative Phenylalanine racemase (ATP-hydrolyzing); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 0.467
NSJP_2658
Homologs of previously reported genes of unknown function.
 
  
 0.452
NSJP_2493
Protein of unknown function; No homology to any previously reported sequences.
       0.404
Your Current Organism:
Nitrospira japonica
NCBI taxonomy Id: 1325564
Other names: N. japonica, Nitrospira sp. NJ1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.