STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEP54_007714DPBB_1 domain-containing protein. (120 aa)    
Predicted Functional Partners:
CEP54_000144
Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.
   
 0.915
CEP54_007755
Uncharacterized protein.
   
 
 0.912
CEP54_002051
Uncharacterized protein.
   
 0.844
CEP54_002050
Uncharacterized protein.
   
 0.844
CEP54_001475
Uncharacterized protein.
   
 
 0.629
CEP54_016173
Protein kinase domain-containing protein.
    
  0.513
CEP54_006110
WD_REPEATS_REGION domain-containing protein.
   
  0.510
NCS6
Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. May also be involved in protein urmylation.
   
 
 0.507
CEP54_007098
CP-type G domain-containing protein.
   
  0.503
CEP54_012489
Ipi1_N domain-containing protein.
   
  0.495
Your Current Organism:
Fusarium sp. AF8
NCBI taxonomy Id: 1325734
Other names: F. sp. AF-8, Fusarium sp. AF-8
Server load: low (26%) [HD]