CEP54_007461 protein (Fusarium sp. AF8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CEP54_007461

Alpha-galactosidase. (542 aa)

Predicted Functional Partners:

CEP54_013390

0.836

CEP54_001772

0.820

CEP54_011420

0.803

CEP54_000661

0.802

CEP54_014418

0.792

CEP54_013253

0.792

CEP54_007058

0.792

CEP54_012427

0.790

CEP54_007264

0.790

CEP54_001296

0.765

Your Current Organism:

Fusarium sp. AF8

NCBI taxonomy Id: 1325734
Other names: F. sp. AF-8, Fusarium sp. AF-8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEP54_000661	CEP54_001296	A0A428R538	A0A428R1J5	Uncharacterized protein.	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.958
CEP54_000661	CEP54_007058	A0A428R538	A0A428Q3R7	Uncharacterized protein.	Aamy domain-containing protein.	0.531
CEP54_000661	CEP54_007264	A0A428R538	A0A428Q212	Uncharacterized protein.	Glyco_hydro_32N domain-containing protein.	0.470
CEP54_000661	CEP54_007461	A0A428R538	A0A428Q1B0	Uncharacterized protein.	Alpha-galactosidase.	0.802
CEP54_000661	CEP54_011420	A0A428R538	A0A428PED8	Uncharacterized protein.	Alpha-galactosidase.	0.802
CEP54_000661	CEP54_013253	A0A428R538	A0A428P416	Uncharacterized protein.	Aamy domain-containing protein.	0.531
CEP54_000661	CEP54_014418	A0A428R538	A0A428NW68	Uncharacterized protein.	Aamy domain-containing protein.	0.531
CEP54_001296	CEP54_000661	A0A428R1J5	A0A428R538	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	Uncharacterized protein.	0.958
CEP54_001296	CEP54_007058	A0A428R1J5	A0A428Q3R7	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	Aamy domain-containing protein.	0.531
CEP54_001296	CEP54_007264	A0A428R1J5	A0A428Q212	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	Glyco_hydro_32N domain-containing protein.	0.470
CEP54_001296	CEP54_007461	A0A428R1J5	A0A428Q1B0	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	Alpha-galactosidase.	0.765
CEP54_001296	CEP54_011420	A0A428R1J5	A0A428PED8	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	Alpha-galactosidase.	0.765
CEP54_001296	CEP54_013253	A0A428R1J5	A0A428P416	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	Aamy domain-containing protein.	0.531
CEP54_001296	CEP54_014418	A0A428R1J5	A0A428NW68	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	Aamy domain-containing protein.	0.531
CEP54_001772	CEP54_007461	A0A428QZC7	A0A428Q1B0	Beta-hexosaminidase.	Alpha-galactosidase.	0.820
CEP54_001772	CEP54_011420	A0A428QZC7	A0A428PED8	Beta-hexosaminidase.	Alpha-galactosidase.	0.820
CEP54_007058	CEP54_000661	A0A428Q3R7	A0A428R538	Aamy domain-containing protein.	Uncharacterized protein.	0.531
CEP54_007058	CEP54_001296	A0A428Q3R7	A0A428R1J5	Aamy domain-containing protein.	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.531
CEP54_007058	CEP54_007264	A0A428Q3R7	A0A428Q212	Aamy domain-containing protein.	Glyco_hydro_32N domain-containing protein.	0.811
CEP54_007058	CEP54_007461	A0A428Q3R7	A0A428Q1B0	Aamy domain-containing protein.	Alpha-galactosidase.	0.792