STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRMT61AtRNA methyltransferase 61A. (308 aa)    
Predicted Functional Partners:
TRMT6
tRNA methyltransferase 6.
   
 0.999
WDR4
WD repeat domain 4.
   
 
 0.993
BUD23
BUD23 rRNA methyltransferase and ribosome maturation factor.
  
 0.981
TRMT11
tRNA methyltransferase 11 homolog.
   
 
 0.981
TRMT10C
tRNA methyltransferase 10C, mitochondrial RNase P subunit.
   
 0.981
TRMT61B
tRNA methyltransferase 61B.
  
  
0.969
VPS36
Vacuolar protein sorting 36 homolog.
    
  0.960
ENSABRP00000016982
annotation not available
   
    0.928
BOP1
BOP1 ribosomal biogenesis factor.
   
    0.879
RCL1
RNA terminal phosphate cyclase like 1.
   
    0.876
Your Current Organism:
Anser brachyrhynchus
NCBI taxonomy Id: 132585
Other names: A. brachyrhynchus, Pink-footed goose
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.