OLF50371.1 protein (Streptococcus acidominimus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Streptococcus acidominimus

NCBI taxonomy Id: 1326
Other names: ATCC 51725, CCUG 27296, CIP 82.4, DSM 20622, LMG 17755, LMG:17755, NCDO 2025, NCIMB 702025, NCTC 12957, S. acidominimus

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OLF47580.1	OLF49137.1	BU200_10130	BU200_09010	Replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
OLF47580.1	OLF49138.1	BU200_10130	BU200_09015	Replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.652
OLF47580.1	OLF49139.1	BU200_10130	BU200_09020	Replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.672
OLF47580.1	OLF50371.1	BU200_10130	BU200_02495	Replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.451
OLF47580.1	OLF50590.1	BU200_10130	BU200_01415	Replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
OLF49136.1	OLF49137.1	BU200_09005	BU200_09010	Dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
OLF49136.1	OLF49138.1	BU200_09005	BU200_09015	Dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OLF49136.1	OLF49139.1	BU200_09005	BU200_09020	Dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OLF49136.1	OLF50371.1	BU200_09005	BU200_02495	Dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910
OLF49136.1	OLF50590.1	BU200_09005	BU200_01415	Dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.568
OLF49137.1	OLF47580.1	BU200_09010	BU200_10130	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
OLF49137.1	OLF49136.1	BU200_09010	BU200_09005	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
OLF49137.1	OLF49138.1	BU200_09010	BU200_09015	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
OLF49137.1	OLF49139.1	BU200_09010	BU200_09020	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
OLF49137.1	OLF49927.1	BU200_09010	BU200_04845	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Plasmid replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
OLF49137.1	OLF50371.1	BU200_09010	BU200_02495	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
OLF49138.1	OLF47580.1	BU200_09015	BU200_10130	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.652
OLF49138.1	OLF49136.1	BU200_09015	BU200_09005	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OLF49138.1	OLF49137.1	BU200_09015	BU200_09010	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
OLF49138.1	OLF49139.1	BU200_09015	BU200_09020	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999