OLF50204.1 protein (Streptococcus acidominimus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Streptococcus acidominimus

NCBI taxonomy Id: 1326
Other names: ATCC 51725, CCUG 27296, CIP 82.4, DSM 20622, LMG 17755, LMG:17755, NCDO 2025, NCIMB 702025, NCTC 12957, S. acidominimus

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OLF49083.1	OLF49292.1	BU200_09205	BU200_08135	Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.694
OLF49083.1	OLF50204.1	BU200_09205	BU200_03410	Derived by automated computational analysis using gene prediction method: Protein Homology.	ADP-ribose pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.624
OLF49083.1	cshB	BU200_09205	BU200_04310	Derived by automated computational analysis using gene prediction method: Protein Homology.	DEAD/DEAH box helicase; Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures.	0.727
OLF49292.1	OLF49083.1	BU200_08135	BU200_09205	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.694
OLF49292.1	OLF50204.1	BU200_08135	BU200_03410	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ADP-ribose pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.616
OLF49765.1	OLF49766.1	BU200_05725	BU200_05730	Peptidase M16; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M16; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
OLF49765.1	OLF50204.1	BU200_05725	BU200_03410	Peptidase M16; Derived by automated computational analysis using gene prediction method: Protein Homology.	ADP-ribose pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.616
OLF49766.1	OLF49765.1	BU200_05730	BU200_05725	Peptidase M16; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M16; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
OLF49766.1	OLF50204.1	BU200_05730	BU200_03410	Peptidase M16; Derived by automated computational analysis using gene prediction method: Protein Homology.	ADP-ribose pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.616
OLF50202.1	OLF50203.1	BU200_03400	BU200_03405	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.845
OLF50202.1	OLF50204.1	BU200_03400	BU200_03410	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ADP-ribose pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.883
OLF50202.1	OLF50206.1	BU200_03400	BU200_03420	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.612
OLF50202.1	OLF50207.1	BU200_03400	BU200_03425	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.612
OLF50202.1	glmU	BU200_03400	BU200_03415	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.	0.845
OLF50203.1	OLF50202.1	BU200_03405	BU200_03400	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.845
OLF50203.1	OLF50204.1	BU200_03405	BU200_03410	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ADP-ribose pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.845
OLF50203.1	OLF50206.1	BU200_03405	BU200_03420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.612
OLF50203.1	OLF50207.1	BU200_03405	BU200_03425	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.612
OLF50203.1	glmU	BU200_03405	BU200_03415	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.	0.845
OLF50204.1	OLF49083.1	BU200_03410	BU200_09205	ADP-ribose pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.624