STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DS2_13619Twin-arginine translocation pathway signal; COG3540 Phosphodiesterase/alkaline phosphatase D. (799 aa)    
Predicted Functional Partners:
DS2_13614
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.810
DS2_13834
Hypothetical protein; COG1914 Mn2+ and Fe2+ transporters of the NRAMP family.
  
     0.743
DS2_12108
Kappa-carrageenase; COG2273 Beta-glucanase/Beta-glucan synthetase.
  
     0.732
DS2_16809
Type I secretion outer membrane protein, TolC.
  
  
  0.731
DS2_05375
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.720
DS2_11523
Agarase.
  
     0.708
DS2_13904
Twin-arginine translocation pathway signal protein.
  
  
  0.702
DS2_12158
Glycoside hydrolase; COG2273 Beta-glucanase/Beta-glucan synthetase.
  
     0.688
DS2_00700
COG1785 Alkaline phosphatase; Belongs to the alkaline phosphatase family.
  
 
 0.678
DS2_06711
3-dehydroquinate synthase; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.677
Your Current Organism:
Catenovulum agarivorans DS2
NCBI taxonomy Id: 1328313
Other names: C. agarivorans DS-2, Catenovulum agarivorans DS-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.