STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A164ZT05Uncharacterized protein. (1264 aa)    
Predicted Functional Partners:
A0A165IUY3
PWI domain-containing protein.
   
 0.954
A0A165JTL8
RRM domain-containing protein.
   
 
 0.925
A0A164ZDL1
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
    
 
 0.918
A0A164ZQN6
L domain-like protein.
    
 0.915
A0A165A4L2
Uncharacterized protein.
    
 0.905
A0A165JUC4
Small nuclear ribonucleoprotein Sm D2.
    
 
 0.894
A0A165I3Z5
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 
 0.888
A0A165IUP2
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 
 0.884
A0A165JC92
Small nuclear ribonucleoprotein G.
    
 
 0.872
A0A165IEM0
Pre-mRNA-splicing ATP-dependent RNA helicase PRP28.
    
 0.869
Your Current Organism:
Xylona heveae
NCBI taxonomy Id: 1328760
Other names: X. heveae TC161, Xylona heveae TC161
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.