STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPVAP00000000257annotation not available (956 aa)    
Predicted Functional Partners:
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
 0.939
ENSPVAP00000000256
annotation not available
 
      0.899
RNPS1
RNA binding protein with serine rich domain 1.
    
 0.899
SMG5
SMG5 nonsense mediated mRNA decay factor.
   
 0.876
SMG7
SMG7 nonsense mediated mRNA decay factor.
    
 0.872
SMG6
SMG6 nonsense mediated mRNA decay factor.
    
 0.872
CASC3
CASC3 exon junction complex subunit.
    
 0.871
UPF3A
UPF3A regulator of nonsense mediated mRNA decay.
    
 0.868
UPF3B
UPF3B regulator of nonsense mediated mRNA decay.
    
 0.868
RBM8A
RNA binding motif protein 8A.
    
 0.865
Your Current Organism:
Pteropus vampyrus
NCBI taxonomy Id: 132908
Other names: P. vampyrus, large flying fox
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.