STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C19orf54Chromosome 19 open reading frame 54. (348 aa)    
Predicted Functional Partners:
LSM2
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.987
SNRPD2
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.986
LSM5
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.981
SNRPG
Small nuclear ribonucleoprotein polypeptide G.
   
 0.979
ENSPVAP00000001964
annotation not available
   
 0.978
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.975
LSM8
LSM8 homolog, U6 small nuclear RNA associated.
   
 0.969
LSM1
LSM1 homolog, mRNA degradation associated.
   
 0.969
ENSPVAP00000014504
annotation not available
   
 0.968
SNRPD1
Small nuclear ribonucleoprotein D1 polypeptide.
   
 0.964
Your Current Organism:
Pteropus vampyrus
NCBI taxonomy Id: 132908
Other names: P. vampyrus, large flying fox
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.