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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSRP1Structure specific recognition protein 1. (707 aa)    
Predicted Functional Partners:
SUPT16H
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 0.999
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.999
SUPT6H
SPT6 homolog, histone chaperone and transcription elongation factor.
   
 0.966
CTR9
CTR9 homolog, Paf1/RNA polymerase II complex component.
   
 0.963
SUPT5H
SPT5 homolog, DSIF elongation factor subunit.
   
 0.961
CDC73
Cell division cycle 73.
   
 0.957
SUPT4H1
SPT4 homolog, DSIF elongation factor subunit.
    
 0.952
ENSPVAP00000004796
annotation not available
    
 0.952
POLR2C
RNA polymerase II subunit C.
    
 0.948
PAF1
PAF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.944
Your Current Organism:
Pteropus vampyrus
NCBI taxonomy Id: 132908
Other names: P. vampyrus, large flying fox
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