STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL28A1Collagen type XXVIII alpha 1 chain. (698 aa)    
Predicted Functional Partners:
COL26A1
Collagen type XXVI alpha 1 chain.
    
 0.730
TPST1
Tyrosylprotein sulfotransferase 1.
    
 0.684
ENSPVAP00000016061
annotation not available
  
0.669
FBXW2
F-box and WD repeat domain containing 2.
    
 0.667
COL1A2
Collagen type I alpha 2 chain.
  
 
0.654
COL2A1
Collagen type II alpha 1 chain.
  
 
0.651
COL13A1
Collagen type XIII alpha 1 chain.
  
 
0.650
COL23A1
Collagen type XXIII alpha 1 chain.
  
 
0.649
COL1A1
Collagen type I alpha 1 chain.
  
 
0.647
P4HB
Prolyl 4-hydroxylase subunit beta.
   
 0.645
Your Current Organism:
Pteropus vampyrus
NCBI taxonomy Id: 132908
Other names: P. vampyrus, large flying fox
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.