STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS13BVacuolar protein sorting 13 homolog B. (4011 aa)    
Predicted Functional Partners:
VPS45
Vacuolar protein sorting 45 homolog.
    
 
 0.688
SLC37A4
Solute carrier family 37 member 4.
      
 0.672
JAGN1
Jagunal homolog 1.
      
 0.660
DNAJC21
DnaJ heat shock protein family (Hsp40) member C21.
      
 0.660
ENSPVAP00000004840
annotation not available
      
 0.650
MED13L
Mediator complex subunit 13L.
   
  
 0.640
LAMTOR2
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.
      
 0.636
TMEM117
Transmembrane protein 117.
      
 0.620
TMEM161B
Transmembrane protein 161B.
      
 0.619
NAALADL2
N-acetylated alpha-linked acidic dipeptidase like 2.
      
 0.614
Your Current Organism:
Pteropus vampyrus
NCBI taxonomy Id: 132908
Other names: P. vampyrus, large flying fox
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.