STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MBD4methyl-CpG binding domain 4, DNA glycosylase. (576 aa)    
Predicted Functional Partners:
APEX1
Apurinic/apyrimidinic endodeoxyribonuclease 1.
     
 0.826
TDG
Thymine DNA glycosylase.
      
 0.800
LIG1
DNA ligase 1.
      
 0.787
POLB
DNA polymerase beta.
      
 0.784
MTA2
Metastasis associated 1 family member 2.
    
 0.781
MTA3
Metastasis associated 1 family member 3.
    
 0.781
MTA1
Metastasis associated 1.
    
 0.781
UNG
Uracil DNA glycosylase.
      
 0.770
RBBP4
RB binding protein 4, chromatin remodeling factor.
    
 0.744
RBBP7
RB binding protein 7, chromatin remodeling factor.
    
 0.744
Your Current Organism:
Pteropus vampyrus
NCBI taxonomy Id: 132908
Other names: P. vampyrus, large flying fox
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.